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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
6
DNase-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
1
small RNA-seq
1
total RNA-seq
Assay category
DNA binding
6
DNA accessibility
5
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
3
control
Date released
10
July, 2019
6
June, 2019
Available data
14
bigWig
11
bam
9
bed bed3+
6
bed broadPeak
6
bed narrowPeak
6
bigBed broadPeak
6
bigBed narrowPeak
5
tsv
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
Organism
16
Homo sapiens
Biosample type
tissue
16
primary cell
Organ
380
epithelium
340
pancreas
74
vasculature
71
blood vessel
69
heart
62
artery
58
connective tissue
33
liver
30
kidney
15
embryo
12
brain
9
blood
9
bodily fluid
5
vein
4
musculature of body
3
adipose tissue
2
eye
1
bone element
1
bone marrow
1
mammary gland
1
pericardium
Project
16
AMP
Genome assembly (visualization)
16
hg19
11
GRCh38
Lab
16
AMP-T2D consortium
assay_slims!
DNA binding
biosample_type!
tissue
organ_slims!
small intestine
BIOSAMPLE
ASSAY
16 results
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DNase-seq
Hi-C
single cell RNA-seq
RRBS
small RNA-seq
total RNA-seq
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
brain pericyte
1
1
cerebellar granule cell
2
choroid plexus epithelial cell
1
1
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