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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
total RNA-seq
10
ATAC-seq
6
pCHi-C
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
2
Hi-C
2
HiChIP
1
DNase-seq
1
MPRA
1
WGBS
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
DNA binding
77
Transcription
11
DNA accessibility
2
3D chromatin structure
1
DNA methylation
1
DNA sequencing
Date released
62
February, 2021
24
August, 2021
6
March, 2020
5
February, 2023
January, 2019
5
October, 2019
2
March, 2023
1
December, 2018
1
January, 2018
1
May, 2020
1
November, 2018
1
October, 2022
Available data
80
tsv
77
bam
69
bigWig
10
bed narrowPeak
2
fastq
1
bed bed3
1
bed bed3+
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
bigBed narrowPeak
1
hic
1
txt
1
vcf
Organism
106
Homo sapiens
Biosample type
1482
tissue
533
primary cell
196
in vitro differentiated cells
109
cell line
7
stem cell
Organ
64
epithelium
pancreas
60
artery
60
blood vessel
60
heart
60
vasculature
18
liver
9
kidney
8
embryo
1
blood
1
bodily fluid
1
mammary gland
Project
102
AMP
5
T1D
2
community
Genome assembly (visualization)
79
hg19
77
GRCh38
Lab
86
AMP-T2D consortium
16
Bing Ren, UCSD
5
Kyle Gaulton, UCSD
2
Anna Gloyn, Oxford
Audit category:
6
inconsistent ontology term
1
inconsistent replicate
assay_slims!
DNA binding
month_released!
January, 2019
March, 2019
organ_slims!
pancreas
BIOSAMPLE
ASSAY
109 results
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total RNA-seq
ATAC-seq
pCHi-C
STARR-seq
CRISPR genome editing followed by DNA sequencing
Hi-C
HiChIP
DNase-seq
MPRA
WGBS
shRNA RNA-seq
siRNA RNA-seq
whole genome sequencing assay
cell line
smooth muscle cell of the coronary artery
52
8
HepG2
9
1
2
2
2
1
1
H1-hESC
8
EndoC_BH1
3
2
EndoC-BH1
1
1
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