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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
21
ATAC-seq
6
pCHi-C
5
STARR-seq
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
3
MeRIP-seq
2
Capture-C
2
DNase-seq
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
WGBS
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
DNA binding
58
Transcription
23
DNA accessibility
4
3D chromatin structure
1
DNA methylation
1
DNA sequencing
Target of assay
3
control
nucleotide modification
Date released
28
February, 2021
26
August, 2021
20
May, 2021
10
March, 2020
7
October, 2019
6
February, 2023
January, 2019
3
November, 2019
3
November, 2020
2
March, 2023
1
December, 2018
1
January, 2018
1
May, 2020
1
November, 2018
1
October, 2022
Available data
62
tsv
54
bigWig
52
bam
4
bed narrowPeak
3
bed bed3+
2
bedpe bed3+
2
bigBed narrowPeak
2
fastq
2
hic
1
bed bed3
1
bed bedMethyl
1
bed broadPeak
1
bigBed bedMethyl
1
bigBed broadPeak
1
hdf5
1
txt
1
vcf
Organism
106
Homo sapiens
Biosample type
1678
tissue
801
primary cell
195
in vitro differentiated cells
110
cell line
7
stem cell
Organ
61
epithelium
61
pancreas
60
artery
60
blood vessel
heart
60
vasculature
18
liver
9
kidney
8
embryo
1
blood
1
bodily fluid
1
mammary gland
Project
101
AMP
7
T1D
2
community
Genome assembly (visualization)
58
hg19
53
GRCh38
Lab
84
AMP-T2D consortium
16
Bing Ren, UCSD
5
Kyle Gaulton, UCSD
3
Rohit N. Kulkarni, M.D., Ph.D.
2
Anna Gloyn, Oxford
Audit category:
64
inconsistent ontology term
1
inconsistent replicate
Audit category:
1
inconsistent assembly
assay_slims!
DNA binding
month_released!
January, 2019
organ_slims!
heart
target.investigated_as!
nucleotide modification
BIOSAMPLE
ASSAY
110 results
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Clear Filters
total RNA-seq
ATAC-seq
pCHi-C
STARR-seq
Hi-C
CRISPR genome editing followed by DNA sequencing
MeRIP-seq
Capture-C
DNase-seq
HiChIP
CRISPR genome editing followed by sgRNA sequencing
MPRA
WGBS
shRNA RNA-seq
siRNA RNA-seq
whole genome sequencing assay
cell line
EndoC_BH1
33
19
1
3
3
2
2
1
HepG2
9
1
2
2
2
1
1
H1-hESC
8
EndoC-BH1
1
1
HEK293T
2
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