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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
total RNA-seq
19
ATAC-seq
6
MeRIP-seq
2
Capture-C
2
Hi-C
1
CRISPR genome editing followed by sgRNA sequencing
1
DNase-seq
Assay category
33
Transcription
DNA binding
20
DNA accessibility
2
3D chromatin structure
Target of assay
3
control
3
nucleotide modification
Date released
26
February, 2021
20
May, 2021
6
November, 2020
4
March, 2020
3
November, 2019
2
August, 2021
2
October, 2019
1
February, 2023
Available data
37
bigWig
35
bam
34
tsv
2
bed bed3+
2
bed narrowPeak
1
bed broadPeak
1
bedpe bed3+
1
bigBed broadPeak
1
bigBed narrowPeak
1
hdf5
1
hic
Organism
63
Homo sapiens
Biosample type
388
tissue
276
primary cell
64
cell line
Organ
64
epithelium
64
pancreas
60
artery
60
blood vessel
60
heart
60
vasculature
23
liver
9
kidney
8
embryo
1
blood
1
bodily fluid
1
mammary gland
Project
62
AMP
2
T1D
Genome assembly (visualization)
39
hg19
36
GRCh38
Lab
58
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
61
inconsistent ontology term
Audit category:
1
inconsistent assembly
assay_slims!
DNA binding
organ_slims!
spleen
BIOSAMPLE
ASSAY
64 results
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total RNA-seq
ATAC-seq
MeRIP-seq
Capture-C
Hi-C
CRISPR genome editing followed by sgRNA sequencing
DNase-seq
cell line
EndoC_BH1
33
19
6
2
1
1
Panc1
1
1
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