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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1167
total RNA-seq
295
ATAC-seq
182
single cell RNA-seq
179
DNase-seq
87
RNA microarray
30
pCHi-C
28
snATAC-seq
27
WGBS
20
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
GRO-seq
4
MeRIP-seq
3
snDrop-seq
2
Capture-C
Assay category
1365
Transcription
DNA binding
506
DNA accessibility
38
DNA methylation
20
3D chromatin structure
Target of assay
2
control
2
nucleotide modification
Date released
567
February, 2021
250
August, 2021
163
June, 2019
143
May, 2020
129
May, 2021
120
July, 2018
109
August, 2017
108
February, 2023
77
July, 2019
66
May, 2022
55
October, 2019
47
September, 2023
46
March, 2020
45
November, 2019
25
February, 2020
19
April, 2020
16
November, 2018
15
February, 2018
15
May, 2023
8
January, 2021
8
October, 2017
6
April, 2018
6
January, 2018
5
December, 2019
5
March, 2019
4
November, 2020
1
August, 2018
1
August, 2022
Available data
1330
bam
1301
bigWig
1207
tsv
411
bed narrowPeak
187
bigBed narrowPeak
183
bed bed3+
179
bed broadPeak
178
fastq
177
bigBed broadPeak
160
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
17
bedpe bed3+
15
hic
10
bed bed3
bed bedgraph
6
csv
2
ibed
1
bedpe
Organism
2057
Homo sapiens
Biosample type
1870
tissue
809
primary cell
189
in vitro differentiated cells
178
cell line
7
stem cell
Organ
499
connective tissue
416
adipose tissue
388
pancreas
272
kidney
206
liver
191
heart
158
bone element
60
blood vessel
60
vasculature
56
brain
56
limb
54
eye
53
musculature of body
45
artery
20
lung
18
ureter
17
epithelium
16
skeleton
8
nerve
7
embryo
5
spleen
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1964
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
1414
GRCh38
1397
hg19
4
hg18
Lab
1733
AMP-T2D consortium
142
Katalin Susztak, Upenn
62
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
4
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
196
inconsistent ontology term
11
audit script error
assay_slims!
DNA binding
files.file_type!
bed bedgraph
BIOSAMPLE
ASSAY
2059 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
pCHi-C
snATAC-seq
WGBS
Hi-C
small RNA-seq
RRBS
FAIRE-seq
GRO-seq
MeRIP-seq
snDrop-seq
Capture-C
tissue
adipose tissue
382
3
1
3
islet of Langerhans
292
68
6
1
4
7
3
1
1
4
kidney
49
75
64
13
6
1
1
1
liver
167
20
1
2
1
3
1
1
1
bone element
84
+ See 104 more…
in vitro differentiated cells
cardiomyocytes
59
cardiac precursors (cardiac muscle cell)
19
1
1
neural progenitor cell
7
10
embryonic stem cell
7
5
1
adipocyte
5
4
1
1
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