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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
116
total RNA-seq
30
ATAC-seq
4
Hi-C
4
pCHi-C
2
single cell RNA-seq
Assay category
118
Transcription
DNA binding
30
DNA accessibility
4
3D chromatin structure
Date released
79
May, 2021
26
February, 2021
17
August, 2021
13
February, 2023
8
March, 2020
6
October, 2019
5
November, 2019
2
December, 2019
Available data
145
bam
134
bigWig
131
tsv
fastq
18
bed narrowPeak
7
bedpe bed3+
5
bed bed3
4
bed bed3+
4
bed bedgraph
4
hic
bigBed narrowPeak
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
156
Homo sapiens
Biosample type
1257
tissue
187
primary cell
156
in vitro differentiated cells
140
cell line
4
stem cell
Organ
22
connective tissue
2
embryo
2
epithelium
1
heart
Project
156
AMP
Genome assembly (visualization)
148
hg19
129
GRCh38
Lab
156
AMP-T2D consortium
10
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
107
inconsistent ontology term
2
audit script error
assay_slims!
DNA binding
files.file_type!
bigBed narrowPeak
fastq
BIOSAMPLE
ASSAY
156 results
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total RNA-seq
ATAC-seq
Hi-C
pCHi-C
single cell RNA-seq
in vitro differentiated cells
cardiomyocytes
59
cardiac precursors (cardiac muscle cell)
19
1
1
neural progenitor cell
7
10
adipocyte
5
5
cardiomyocytes (cardiac muscle cell)
3
1
2
2
2
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