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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
114
total RNA-seq
38
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
DNA binding
116
Transcription
39
DNA accessibility
4
3D chromatin structure
Date released
89
May, 2021
February, 2021
21
August, 2021
16
February, 2023
15
February, 2018
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2017
1
August, 2018
Available data
123
bam
122
bigWig
109
tsv
22
bed narrowPeak
21
fastq
7
bedpe bed3+
6
bed bed3+
5
bed bed3
4
hic
3
bed bedgraph
3
bigBed narrowPeak
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
170
Homo sapiens
Biosample type
1325
tissue
761
primary cell
170
in vitro differentiated cells
85
cell line
7
stem cell
Organ
22
connective tissue
7
embryo
2
epithelium
1
adipose tissue
1
heart
Project
170
AMP
Genome assembly (visualization)
152
hg19
123
GRCh38
4
hg18
Lab
153
AMP-T2D consortium
10
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
90
inconsistent ontology term
2
audit script error
assay_slims!
DNA binding
files.file_type!
tagAlign bed3+
month_released!
February, 2021
January, 2019
BIOSAMPLE
ASSAY
170 results
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total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
cardiomyocytes
59
neural progenitor cell
7
10
embryonic stem cell
7
6
1
cardiomyocytes (cardiac muscle cell)
3
1
2
2
2
induced pluripotent stem cell
9
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