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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
38
ATAC-seq
9
total RNA-seq
4
GRO-seq
4
Hi-C
3
pCHi-C
2
Capture-C
1
DNase-seq
Assay category
DNA binding
39
DNA accessibility
9
Transcription
4
3D chromatin structure
Date released
16
February, 2023
14
August, 2021
10
May, 2021
6
October, 2019
5
November, 2019
February, 2021
4
January, 2018
4
March, 2020
1
August, 2017
1
August, 2018
Available data
108
bam
107
bigWig
tsv
22
bed narrowPeak
7
bedpe bed3+
6
bed bed3+
6
fastq
5
bed bed3
4
hic
3
bed bedgraph
3
bigBed narrowPeak
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
61
Homo sapiens
Biosample type
701
tissue
498
primary cell
61
in vitro differentiated cells
49
cell line
3
stem cell
Organ
21
connective tissue
1
adipose tissue
1
embryo
Project
61
AMP
Genome assembly (visualization)
47
hg19
18
GRCh38
4
hg18
Lab
44
AMP-T2D consortium
10
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
18
inconsistent ontology term
assay_slims!
DNA binding
files.file_type!
tsv
month_released!
February, 2018
February, 2021
BIOSAMPLE
ASSAY
61 results
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ATAC-seq
total RNA-seq
GRO-seq
Hi-C
pCHi-C
Capture-C
DNase-seq
in vitro differentiated cells
embryonic stem cell
6
5
neural progenitor cell
10
adipocyte
4
1
1
1
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
chondrocyte
5
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