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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
48
total RNA-seq
7
ATAC-seq
4
GRO-seq
1
DNase-seq
Assay category
DNA binding
48
Transcription
8
DNA accessibility
Date released
May, 2021
22
February, 2021
15
February, 2018
9
August, 2021
4
January, 2018
4
October, 2019
3
February, 2023
2
March, 2020
1
August, 2017
Available data
66
bam
60
bigWig
52
tsv
22
bed narrowPeak
21
fastq
7
bed bedgraph
7
bedpe bed3+
6
bed bed3+
5
bed bed3
4
hic
3
bigBed narrowPeak
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
60
Homo sapiens
Biosample type
1119
tissue
312
primary cell
107
cell line
60
in vitro differentiated cells
1
stem cell
Organ
9
connective tissue
5
embryo
Project
60
AMP
Genome assembly (visualization)
56
hg19
49
GRCh38
4
hg18
Lab
55
AMP-T2D consortium
5
Struan F.A. Grant, CHOP
Audit category:
23
inconsistent ontology term
assay_slims!
DNA binding
month_released!
May, 2021
organ_slims!
skin of body
BIOSAMPLE
ASSAY
60 results
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total RNA-seq
ATAC-seq
GRO-seq
DNase-seq
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
19
adipocyte
4
3
1
neural progenitor cell
7
pancreatic endoderm
4
1
definitive endodermal cell
2
1
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