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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
129
total RNA-seq
30
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
single cell RNA-seq
1
DNase-seq
Assay category
DNA binding
131
Transcription
31
DNA accessibility
4
3D chromatin structure
Date released
89
May, 2021
26
February, 2021
August, 2021
16
February, 2023
15
February, 2018
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2017
1
August, 2018
Available data
135
bigWig
128
bam
124
tsv
21
fastq
10
bed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
bed bed3+
4
hic
3
bigBed narrowPeak
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
175
Homo sapiens
Biosample type
1640
tissue
801
primary cell
175
in vitro differentiated cells
147
cell line
5
stem cell
Organ
26
connective tissue
7
embryo
2
epithelium
1
adipose tissue
1
heart
Project
175
AMP
Genome assembly (visualization)
157
hg19
128
GRCh38
4
hg18
Lab
162
AMP-T2D consortium
10
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
108
inconsistent ontology term
2
audit script error
assay_slims!
DNA binding
month_released!
August, 2021
organ_slims!
blood
BIOSAMPLE
ASSAY
175 results
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total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
cardiomyocytes
59
cardiac precursors (cardiac muscle cell)
19
1
1
embryonic stem cell
7
6
1
adipocyte
5
7
1
cardiomyocytes (cardiac muscle cell)
3
1
2
2
2
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