Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
128
total RNA-seq
38
ATAC-seq
5
pCHi-C
3
GRO-seq
2
Capture-C
2
Hi-C
2
single cell RNA-seq
1
DNase-seq
Assay category
DNA binding
130
Transcription
39
DNA accessibility
2
3D chromatin structure
Date released
87
May, 2021
26
February, 2021
21
August, 2021
16
February, 2023
11
February, 2018
8
March, 2020
October, 2019
5
November, 2019
3
January, 2018
2
December, 2019
1
August, 2017
1
August, 2018
Available data
135
bam
133
bigWig
123
tsv
20
bed narrowPeak
16
fastq
7
bed bedgraph
6
bed bed3+
5
bed bed3
5
bedpe bed3+
3
txt
2
hic
2
ibed
1
bed broadPeak
1
bigBed broadPeak
1
bigBed narrowPeak
Organism
181
Homo sapiens
Biosample type
1823
tissue
799
primary cell
181
in vitro differentiated cells
163
cell line
7
stem cell
Organ
28
connective tissue
embryo
2
epithelium
1
adipose tissue
1
heart
Project
181
AMP
Genome assembly (visualization)
164
hg19
135
GRCh38
3
hg18
Lab
164
AMP-T2D consortium
10
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
100
inconsistent ontology term
2
audit script error
assay_slims!
DNA binding
month_released!
October, 2019
organ_slims!
embryo
BIOSAMPLE
ASSAY
181 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
Capture-C
Hi-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
cardiomyocytes
59
cardiac precursors (cardiac muscle cell)
18
neural progenitor cell
7
10
embryonic stem cell
7
6
1
adipocyte
5
6
1
1
+ See 25 more…
See all biosamples
Download