Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
136
total RNA-seq
42
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
DNA binding
138
Transcription
43
DNA accessibility
4
3D chromatin structure
Date released
89
May, 2021
26
February, 2021
21
August, 2021
16
February, 2023
15
February, 2018
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2017
1
August, 2018
Available data
145
bam
144
bigWig
131
tsv
22
bed narrowPeak
21
fastq
7
bed bedgraph
7
bedpe bed3+
6
bed bed3+
5
bed bed3
4
hic
3
bigBed narrowPeak
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
196
Homo sapiens
Biosample type
1870
tissue
709
primary cell
196
in vitro differentiated cells
178
cell line
7
stem cell
Organ
30
connective tissue
7
embryo
2
epithelium
1
adipose tissue
1
heart
Project
196
AMP
Genome assembly (visualization)
178
hg19
145
GRCh38
4
hg18
Lab
179
AMP-T2D consortium
10
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
108
inconsistent ontology term
2
audit script error
assay_slims!
DNA binding
month_released!
September, 2018
September, 2020
BIOSAMPLE
ASSAY
196 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
cardiomyocytes
59
cardiac precursors (cardiac muscle cell)
19
1
1
neural progenitor cell
7
10
adipocyte
5
8
1
1
embryonic stem cell
7
6
1
+ See 28 more…
See all biosamples
Download