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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
total RNA-seq
200
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
31
DNase-seq
21
pCHi-C
10
RRBS
7
Hi-C
2
small RNA-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
FAIRE-seq
1
GRO-seq
Assay category
438
Transcription
288
DNA accessibility
DNA binding
58
DNA methylation
7
3D chromatin structure
Target of assay
3
control
Date released
147
May, 2020
134
May, 2022
88
February, 2023
85
May, 2021
59
September, 2020
48
February, 2021
48
July, 2018
43
April, 2018
41
September, 2018
31
July, 2019
24
June, 2019
10
October, 2019
8
January, 2021
7
August, 2020
6
August, 2017
6
November, 2020
5
December, 2019
5
March, 2020
5
September, 2017
3
August, 2018
3
June, 2018
3
March, 2023
October, 2022
2
October, 2018
1
January, 2018
1
November, 2018
Available data
367
bam
367
bigWig
316
fastq
274
tsv
153
zippedFastqFolder
69
bed narrowPeak
52
bigBed narrowPeak
34
bed bed3+
28
bed broadPeak
28
bigBed broadPeak
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
3
hic
2
csv
1
bed bed3
1
bedpe bed3+
1
tar
Organism
811
Homo sapiens
Biosample type
1865
tissue
806
primary cell
196
in vitro differentiated cells
177
cell line
7
stem cell
Organ
311
epithelium
273
pancreas
28
connective tissue
21
kidney
14
vasculature
12
brain
11
blood vessel
10
liver
8
blood
8
bodily fluid
8
heart
5
vein
4
musculature of body
2
adipose tissue
2
artery
2
eye
1
bone element
1
bone marrow
1
pericardium
Project
369
AMP
321
HPAP
120
T1D
2
community
1
ITG
Genome assembly (visualization)
378
hg19
329
GRCh38
1
hg18
Lab
367
AMP-T2D consortium
321
Klaus Kaestner, Upenn
122
Kyle Gaulton, UCSD
2
Anna Gloyn, Oxford
1
ITG
Audit category:
30
inconsistent ontology term
28
audit script error
assay_slims!
DNA binding
month_released!
March, 2019
October, 2022
BIOSAMPLE
ASSAY
813 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
RRBS
Hi-C
small RNA-seq
CRISPR RNA-seq
CRISPRi RNA-seq
DNAme array
FAIRE-seq
GRO-seq
primary cell
Langerhans cell
85
48
pancreatic alpha cell
52
35
12
31
pancreatic beta cell
21
23
12
16
monocyte
54
15
1
1
exocrine cell
39
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stem cell
SB Ad3.1
1
1
hESC
1
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
+ See 1 more…
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