Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
245
total RNA-seq
200
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
16
pCHi-C
10
RRBS
6
Hi-C
4
DNase-seq
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
434
Transcription
DNA binding
261
DNA accessibility
58
DNA methylation
6
3D chromatin structure
Target of assay
3
control
Date released
147
May, 2020
134
May, 2022
88
February, 2023
83
May, 2021
59
September, 2020
48
July, 2018
47
February, 2021
43
April, 2018
41
September, 2018
27
July, 2019
8
January, 2021
8
October, 2019
7
August, 2020
6
August, 2017
5
December, 2019
5
November, 2020
5
September, 2017
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
367
bam
366
bigWig
315
fastq
270
tsv
153
zippedFastqFolder
69
bed narrowPeak
52
bigBed narrowPeak
bed bed3+
28
bed broadPeak
28
bigBed broadPeak
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
775
Homo sapiens
Biosample type
1687
tissue
775
primary cell
190
in vitro differentiated cells
175
cell line
7
stem cell
Organ
296
epithelium
276
pancreas
19
connective tissue
11
kidney
8
blood
8
bodily fluid
7
liver
6
vasculature
5
blood vessel
5
heart
4
brain
3
musculature of body
3
vein
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
eye
1
pericardium
Project
330
AMP
324
HPAP
120
T1D
1
ITG
Genome assembly (visualization)
354
hg19
302
GRCh38
Lab
330
AMP-T2D consortium
324
Klaus Kaestner, Upenn
120
Kyle Gaulton, UCSD
1
ITG
Audit category:
31
audit script error
26
inconsistent ontology term
assay_slims!
DNA binding
files.file_type!
bed bed3+
organ_slims!
nerve
BIOSAMPLE
ASSAY
775 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
pCHi-C
RRBS
Hi-C
DNase-seq
small RNA-seq
DNAme array
FAIRE-seq
primary cell
Langerhans cell
85
48
pancreatic alpha cell
52
35
12
31
1
pancreatic beta cell
21
23
12
16
1
monocyte
54
15
1
1
exocrine cell
39
+ See 83 more…
See all biosamples
Download