Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
total RNA-seq
200
ATAC-seq
144
single cell RNA-seq
56
snATAC-seq
47
WGBS
31
DNase-seq
17
pCHi-C
10
Hi-C
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
393
Transcription
288
DNA accessibility
DNA binding
48
DNA methylation
10
3D chromatin structure
Target of assay
3
control
Date released
147
May, 2020
134
May, 2022
88
February, 2023
85
May, 2021
59
September, 2020
48
February, 2021
48
July, 2018
April, 2018
41
September, 2018
24
June, 2019
22
July, 2019
10
October, 2019
8
January, 2021
7
August, 2020
6
November, 2020
5
August, 2017
5
December, 2019
5
September, 2017
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
324
bam
323
bigWig
277
fastq
227
tsv
153
zippedFastqFolder
69
bed narrowPeak
52
bigBed narrowPeak
34
bed bed3+
28
bed broadPeak
28
bigBed broadPeak
10
bed bedMethyl
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
756
Homo sapiens
Biosample type
1839
tissue
756
primary cell
196
in vitro differentiated cells
177
cell line
7
stem cell
Organ
275
epithelium
243
pancreas
24
connective tissue
18
kidney
13
vasculature
11
blood vessel
11
brain
9
liver
8
blood
8
bodily fluid
7
heart
5
vein
3
musculature of body
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
eye
1
pericardium
Project
324
HPAP
311
AMP
120
T1D
1
ITG
Genome assembly (visualization)
328
hg19
286
GRCh38
Lab
324
Klaus Kaestner, Upenn
309
AMP-T2D consortium
122
Kyle Gaulton, UCSD
1
ITG
Audit category:
31
audit script error
27
inconsistent ontology term
assay_slims!
DNA binding
files.file_type!
bigBed bedMethyl
month_released!
April, 2018
BIOSAMPLE
ASSAY
756 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
small RNA-seq
DNAme array
FAIRE-seq
primary cell
Langerhans cell
85
48
pancreatic alpha cell
52
35
9
31
1
monocyte
54
15
1
1
pancreatic beta cell
21
23
9
16
1
exocrine cell
39
+ See 91 more…
See all biosamples
Download