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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
total RNA-seq
200
ATAC-seq
144
single cell RNA-seq
56
snATAC-seq
47
WGBS
17
pCHi-C
10
Hi-C
10
RRBS
3
DNase-seq
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
393
Transcription
260
DNA accessibility
DNA binding
58
DNA methylation
10
3D chromatin structure
Target of assay
3
control
Date released
147
May, 2020
134
May, 2022
88
February, 2023
85
May, 2021
59
September, 2020
48
February, 2021
48
July, 2018
April, 2018
41
September, 2018
31
July, 2019
8
January, 2021
8
October, 2019
7
August, 2020
5
August, 2017
5
December, 2019
5
November, 2020
5
September, 2017
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
324
bam
323
bigWig
277
fastq
227
tsv
153
zippedFastqFolder
69
bed narrowPeak
52
bigBed narrowPeak
34
bed bed3+
28
bed broadPeak
bigBed broadPeak
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
738
Homo sapiens
Biosample type
1688
tissue
738
primary cell
195
in vitro differentiated cells
177
cell line
7
stem cell
Organ
265
epithelium
243
pancreas
19
connective tissue
11
kidney
8
blood
8
bodily fluid
8
liver
8
vasculature
7
blood vessel
7
brain
5
heart
3
musculature of body
3
vein
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
eye
1
pericardium
Project
324
HPAP
293
AMP
120
T1D
1
ITG
Genome assembly (visualization)
317
hg19
259
GRCh38
Lab
324
Klaus Kaestner, Upenn
291
AMP-T2D consortium
122
Kyle Gaulton, UCSD
1
ITG
Audit category:
31
audit script error
26
inconsistent ontology term
assay_slims!
DNA binding
files.file_type!
bigBed broadPeak
month_released!
April, 2018
BIOSAMPLE
ASSAY
738 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
DNase-seq
small RNA-seq
DNAme array
FAIRE-seq
primary cell
Langerhans cell
85
48
pancreatic alpha cell
52
35
9
31
1
monocyte
54
15
1
1
pancreatic beta cell
21
23
9
16
1
exocrine cell
39
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