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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
190
total RNA-seq
52
single cell RNA-seq
35
snATAC-seq
16
pCHi-C
10
ATAC-seq
6
WGBS
4
Hi-C
Assay category
242
Transcription
DNA binding
45
DNA accessibility
6
DNA methylation
4
3D chromatin structure
Date released
May, 2022
76
February, 2023
69
May, 2021
59
September, 2020
45
February, 2021
45
May, 2020
8
January, 2021
7
August, 2020
3
October, 2022
1
March, 2023
Available data
169
fastq
108
bigWig
102
tsv
96
bam
19
zippedFastqFolder
4
hic
3
bedpe bed3+
3
cool
2
bed bed3+
Organism
313
Homo sapiens
Biosample type
313
primary cell
248
tissue
29
cell line
17
in vitro differentiated cells
2
stem cell
Organ
72
epithelium
72
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
Project
190
HPAP
120
T1D
2
AMP
1
ITG
Genome assembly (visualization)
107
GRCh38
101
hg19
Lab
AMP-T2D consortium
190
Klaus Kaestner, Upenn
122
Kyle Gaulton, UCSD
1
ITG
Audit category:
30
audit script error
5
inconsistent ontology term
assay_slims!
DNA binding
lab.title!
AMP-T2D consortium
month_released!
December, 2019
May, 2022
BIOSAMPLE
ASSAY
313 results
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total RNA-seq
single cell RNA-seq
snATAC-seq
pCHi-C
ATAC-seq
WGBS
Hi-C
primary cell
Langerhans cell
52
27
pancreatic alpha cell
42
7
6
1
monocyte
53
1
exocrine cell
39
pancreatic beta cell
11
3
1
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