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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
137
total RNA-seq
85
single cell RNA-seq
56
snATAC-seq
16
pCHi-C
1
Hi-C
Assay category
222
Transcription
DNA binding
56
DNA accessibility
1
3D chromatin structure
Date released
69
May, 2021
54
May, 2022
45
May, 2020
40
September, 2020
39
February, 2021
39
February, 2023
8
January, 2021
1
March, 2023
Available data
100
fastq
98
bigWig
96
bam
96
tsv
73
zippedFastqFolder
2
bed bed3+
1
hic
Organism
295
Homo sapiens
Biosample type
295
primary cell
249
tissue
23
cell line
17
in vitro differentiated cells
2
stem cell
Organ
152
epithelium
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
Project
172
HPAP
120
T1D
2
AMP
1
ITG
Genome assembly (visualization)
98
hg19
97
GRCh38
Lab
AMP-T2D consortium
172
Klaus Kaestner, Upenn
122
Kyle Gaulton, UCSD
1
ITG
Audit category:
27
audit script error
5
inconsistent ontology term
assay_slims!
DNA binding
lab.title!
AMP-T2D consortium
organ_slims!
pancreas
vein
BIOSAMPLE
ASSAY
295 results
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total RNA-seq
single cell RNA-seq
snATAC-seq
pCHi-C
Hi-C
primary cell
Langerhans cell
85
48
monocyte
53
1
exocrine cell
39
peripheral blood mononuclear cell
8
CD8-positive, alpha-beta T cell
4
1
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