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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
total RNA-seq
200
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
29
DNase-seq
16
pCHi-C
10
RRBS
8
Hi-C
2
small RNA-seq
1
DNAme array
Assay category
436
Transcription
285
DNA accessibility
DNA binding
58
DNA methylation
8
3D chromatin structure
Target of assay
3
control
Date released
147
May, 2020
134
May, 2022
88
February, 2023
84
May, 2021
59
September, 2020
48
February, 2021
48
July, 2018
43
April, 2018
41
September, 2018
31
July, 2019
24
June, 2019
8
January, 2021
7
August, 2020
6
August, 2017
6
November, 2020
6
October, 2019
5
December, 2019
5
September, 2017
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2023
1
November, 2018
Available data
364
bam
363
bigWig
315
fastq
270
tsv
153
zippedFastqFolder
66
bed narrowPeak
49
bigBed narrowPeak
32
bed bed3+
26
bed broadPeak
26
bigBed broadPeak
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
4
hic
3
bedpe bed3+
3
cool
2
csv
1
bed bed3
Organism
803
Homo sapiens
Biosample type
1662
tissue
803
primary cell
196
in vitro differentiated cells
178
cell line
7
stem cell
Organ
314
epithelium
276
pancreas
27
connective tissue
21
kidney
14
vasculature
12
brain
11
blood vessel
10
liver
8
blood
8
bodily fluid
8
heart
vein
4
musculature of body
2
adipose tissue
2
artery
2
eye
bone element
1
bone marrow
1
pericardium
Project
359
AMP
324
HPAP
119
T1D
1
ITG
Genome assembly (visualization)
376
hg19
327
GRCh38
Lab
357
AMP-T2D consortium
324
Klaus Kaestner, Upenn
121
Kyle Gaulton, UCSD
1
ITG
Audit category:
30
audit script error
29
inconsistent ontology term
assay_slims!
DNA binding
organ_slims!
bone element
limb
vein
BIOSAMPLE
ASSAY
803 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
RRBS
Hi-C
small RNA-seq
DNAme array
primary cell
Langerhans cell
85
48
pancreatic alpha cell
52
35
12
31
1
pancreatic beta cell
21
23
12
16
1
monocyte
54
15
1
1
exocrine cell
39
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