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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
81
total RNA-seq
74
single cell RNA-seq
71
ATAC-seq
47
WGBS
3
Hi-C
1
pCHi-C
Assay category
155
Transcription
71
DNA accessibility
DNA binding
47
DNA methylation
3
3D chromatin structure
Date released
80
May, 2022
40
September, 2018
37
February, 2023
37
July, 2018
33
April, 2018
19
September, 2020
7
August, 2020
6
February, 2021
5
September, 2017
3
August, 2017
3
August, 2018
3
October, 2022
2
October, 2018
1
June, 2018
1
May, 2021
Available data
188
fastq
134
bigWig
124
bam
108
tsv
80
zippedFastqFolder
22
bed narrowPeak
22
bigBed narrowPeak
3
bedpe bed3+
3
cool
3
hic
Organism
277
Homo sapiens
Biosample type
546
tissue
277
primary cell
64
cell line
Organ
314
epithelium
276
pancreas
27
connective tissue
21
kidney
14
vasculature
12
brain
11
blood vessel
10
liver
8
blood
8
bodily fluid
8
heart
5
vein
4
musculature of body
2
adipose tissue
2
artery
2
eye
1
bone element
1
bone marrow
1
pericardium
Project
152
HPAP
124
AMP
1
T1D
Genome assembly (visualization)
134
GRCh38
127
hg19
Lab
152
Klaus Kaestner, Upenn
124
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
5
inconsistent ontology term
3
audit script error
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
277 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
WGBS
Hi-C
pCHi-C
primary cell
pancreatic alpha cell
52
12
35
31
1
pancreatic beta cell
21
12
23
16
1
pancreatic acinar cell
4
12
9
1
pancreatic ductal cell
4
10
4
pancreatic delta cell
11
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