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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1011
total RNA-seq
238
ATAC-seq
180
single cell RNA-seq
178
DNase-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1207
Transcription
DNA binding
448
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
2
control
2
nucleotide modification
Date released
545
February, 2021
229
August, 2021
163
June, 2019
143
May, 2020
120
July, 2018
108
August, 2017
95
February, 2023
77
July, 2019
47
October, 2019
47
September, 2023
40
May, 2021
40
November, 2019
38
March, 2020
26
May, 2022
25
February, 2020
19
April, 2020
16
November, 2018
15
May, 2023
8
January, 2021
8
October, 2017
6
April, 2018
4
November, 2020
3
December, 2019
3
March, 2019
2
January, 2018
1
August, 2022
Available data
1184
bam
1137
bigWig
1076
tsv
369
bed narrowPeak
184
bigBed narrowPeak
177
bed bed3+
177
bed broadPeak
176
bigBed broadPeak
157
txt
156
fastq
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
Organism
1826
Homo sapiens
Biosample type
1828
tissue
primary cell
196
in vitro differentiated cells
178
cell line
7
stem cell
Organ
473
connective tissue
415
adipose tissue
386
pancreas
272
kidney
190
heart
166
liver
158
bone element
60
blood vessel
60
vasculature
56
brain
56
limb
54
eye
53
musculature of body
45
artery
20
lung
18
ureter
16
skeleton
15
epithelium
8
nerve
5
spleen
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1733
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
1268
GRCh38
1205
hg19
Lab
1558
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
89
inconsistent ontology term
9
audit script error
assay_slims!
DNA binding
biosample_type!
primary cell
lab.title!
Karen Mohlke, UNC
Mark McCarthy, Oxford
BIOSAMPLE
ASSAY
1828 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
adipose tissue
382
3
3
1
islet of Langerhans
292
66
6
1
7
4
3
1
1
4
kidney
49
75
64
13
6
1
1
1
liver
147
1
2
3
1
1
1
1
bone element
84
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