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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1031
total RNA-seq
260
ATAC-seq
180
single cell RNA-seq
87
RNA microarray
27
snATAC-seq
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
WGBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
2
DNase-seq
2
RRBS
Assay category
1227
Transcription
293
DNA accessibility
DNA binding
16
3D chromatin structure
13
DNA methylation
Target of assay
2
control
2
nucleotide modification
Date released
545
February, 2021
229
August, 2021
143
May, 2020
120
July, 2018
103
August, 2017
95
February, 2023
65
May, 2022
63
July, 2019
47
September, 2023
43
October, 2019
40
May, 2021
40
November, 2019
38
March, 2020
25
February, 2020
19
April, 2020
15
May, 2023
8
January, 2021
8
October, 2017
6
April, 2018
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
1
November, 2018
Available data
1185
bam
1157
bigWig
1076
tsv
389
bed narrowPeak
184
bigBed narrowPeak
178
bed broadPeak
bed bed3+
176
bigBed broadPeak
157
fastq
157
txt
64
xls
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
Organism
1666
Homo sapiens
Biosample type
1668
tissue
765
primary cell
190
in vitro differentiated cells
174
cell line
7
stem cell
Organ
469
connective tissue
411
adipose tissue
376
pancreas
203
kidney
202
liver
158
bone element
156
heart
54
blood vessel
54
vasculature
51
eye
41
artery
28
brain
20
lung
19
limb
17
musculature of body
16
skeleton
15
epithelium
6
nerve
2
intestine
2
spleen
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1573
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
1077
GRCh38
1056
hg19
Lab
1356
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
88
inconsistent ontology term
8
audit script error
assay_slims!
DNA binding
files.file_type!
bed bed3+
bed bedMethyl
target.investigated_as!
histone
BIOSAMPLE
ASSAY
1668 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
RNA microarray
snATAC-seq
pCHi-C
Hi-C
small RNA-seq
WGBS
FAIRE-seq
MeRIP-seq
snDrop-seq
DNase-seq
RRBS
tissue
adipose tissue
382
3
1
1
islet of Langerhans
292
68
6
7
4
3
1
4
1
kidney
49
75
64
6
1
1
liver
167
20
1
1
1
1
3
bone element
84
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