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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1000
total RNA-seq
254
ATAC-seq
180
single cell RNA-seq
178
DNase-seq
87
RNA microarray
28
snATAC-seq
23
pCHi-C
12
Hi-C
7
WGBS
4
MeRIP-seq
3
snDrop-seq
2
FAIRE-seq
2
RRBS
Assay category
1180
Transcription
DNA binding
462
DNA accessibility
12
3D chromatin structure
9
DNA methylation
Target of assay
2
control
2
nucleotide modification
Date released
545
February, 2021
229
August, 2021
163
June, 2019
143
May, 2020
120
July, 2018
103
August, 2017
95
February, 2023
66
May, 2022
July, 2019
47
October, 2019
47
September, 2023
40
May, 2021
40
November, 2019
36
March, 2020
25
February, 2020
19
April, 2020
15
May, 2023
10
November, 2018
8
January, 2021
8
October, 2017
6
April, 2018
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1121
bam
1094
bigWig
1027
tsv
382
bed narrowPeak
182
bigBed narrowPeak
178
bed broadPeak
177
bed bed3+
176
bigBed broadPeak
157
fastq
157
txt
64
xls
bed bedMethyl
11
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
Organism
1778
Homo sapiens
Biosample type
1780
tissue
777
primary cell
196
in vitro differentiated cells
177
cell line
7
stem cell
Organ
461
connective tissue
403
adipose tissue
378
pancreas
268
kidney
197
liver
170
heart
158
bone element
54
eye
53
blood vessel
53
vasculature
51
limb
45
brain
44
artery
44
musculature of body
20
lung
18
ureter
16
skeleton
15
epithelium
8
nerve
3
spleen
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1685
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
1200
GRCh38
1163
hg19
Lab
1468
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
89
inconsistent ontology term
9
audit script error
assay_slims!
DNA binding
files.file_type!
bed bedMethyl
month_released!
July, 2019
organ_slims!
intestine
BIOSAMPLE
ASSAY
1780 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
pCHi-C
Hi-C
WGBS
MeRIP-seq
snDrop-seq
FAIRE-seq
RRBS
tissue
adipose tissue
382
3
1
1
islet of Langerhans
292
68
6
1
7
4
3
4
1
kidney
49
75
64
13
6
1
liver
165
20
1
2
1
1
3
bone element
84
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