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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1031
total RNA-seq
258
ATAC-seq
180
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
24
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
2
DNase-seq
Assay category
1227
Transcription
DNA binding
292
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
2
control
2
nucleotide modification
Date released
545
February, 2021
229
August, 2021
143
May, 2020
120
July, 2018
108
August, 2017
95
February, 2023
77
July, 2019
66
May, 2022
47
September, 2023
43
October, 2019
40
May, 2021
40
November, 2019
37
March, 2020
25
February, 2020
19
April, 2020
15
May, 2023
8
January, 2021
7
November, 2018
7
October, 2017
6
April, 2018
4
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1185
bam
1157
bigWig
1075
tsv
389
bed narrowPeak
184
bigBed narrowPeak
bed broadPeak
177
bed bed3+
176
bigBed broadPeak
157
fastq
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
Organism
1689
Homo sapiens
Biosample type
1691
tissue
781
primary cell
195
in vitro differentiated cells
177
cell line
7
stem cell
Organ
471
connective tissue
413
adipose tissue
380
pancreas
204
kidney
203
liver
163
heart
158
bone element
55
blood vessel
55
vasculature
51
eye
41
artery
29
brain
21
musculature of body
20
limb
20
lung
16
skeleton
15
epithelium
6
nerve
4
spleen
2
intestine
2
thymus
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1596
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
1092
GRCh38
1065
hg19
Lab
1381
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
88
inconsistent ontology term
9
audit script error
assay_slims!
DNA binding
files.file_type!
bed broadPeak
organ_slims!
adrenal gland
target.investigated_as!
recombinant protein
BIOSAMPLE
ASSAY
1691 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
DNase-seq
tissue
adipose tissue
382
3
3
1
islet of Langerhans
292
66
6
7
4
3
1
1
4
1
kidney
49
75
64
6
1
1
1
liver
167
20
1
3
1
1
1
1
bone element
84
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