Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1029
total RNA-seq
223
ATAC-seq
174
DNase-seq
172
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1217
Transcription
DNA binding
429
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
2
control
2
nucleotide modification
Date released
539
February, 2021
227
August, 2021
161
June, 2019
143
May, 2020
120
July, 2018
108
August, 2017
76
July, 2019
66
May, 2022
60
February, 2023
47
September, 2023
44
October, 2019
40
May, 2021
40
November, 2019
38
March, 2020
23
February, 2020
19
April, 2020
16
November, 2018
15
May, 2023
8
January, 2021
8
October, 2017
6
April, 2018
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1179
bam
1151
bigWig
1072
tsv
348
bed narrowPeak
180
bigBed narrowPeak
174
bed broadPeak
173
bed bed3+
172
bigBed broadPeak
157
fastq
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
csv
5
bed bed3
1
bedpe
Organism
1817
Homo sapiens
Biosample type
1819
tissue
805
primary cell
196
in vitro differentiated cells
118
cell line
7
stem cell
Organ
473
connective tissue
415
adipose tissue
388
pancreas
267
kidney
205
liver
190
heart
158
bone element
60
blood vessel
60
vasculature
56
brain
56
limb
54
eye
53
musculature of body
artery
20
lung
18
ureter
16
skeleton
15
epithelium
8
nerve
5
spleen
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1724
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
1228
GRCh38
1220
hg19
Lab
1507
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
89
inconsistent ontology term
4
audit script error
assay_slims!
DNA binding
files.file_type!
csv
organ_slims!
artery
BIOSAMPLE
ASSAY
1819 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
adipose tissue
382
3
3
1
islet of Langerhans
292
68
1
6
7
4
3
1
1
4
kidney
49
75
13
59
6
1
1
1
liver
167
20
2
3
1
1
1
1
bone element
84
+ See 101 more…
See all biosamples
Download