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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
567
total RNA-seq
232
ATAC-seq
178
DNase-seq
174
single cell RNA-seq
27
WGBS
27
snATAC-seq
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
2
RNA microarray
Assay category
DNA binding
757
Transcription
441
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
2
control
2
nucleotide modification
Date released
February, 2021
228
August, 2021
163
June, 2019
143
May, 2020
120
July, 2018
108
August, 2017
95
February, 2023
77
July, 2019
47
October, 2019
47
September, 2023
40
May, 2021
40
November, 2019
38
March, 2020
26
May, 2022
25
February, 2020
18
April, 2020
16
November, 2018
15
May, 2023
8
January, 2021
8
October, 2017
6
April, 2018
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
733
bam
693
bigWig
624
tsv
361
bed narrowPeak
184
bigBed narrowPeak
178
bed broadPeak
177
bed bed3+
176
bigBed broadPeak
157
fastq
68
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
5
bed bed3
1
bedpe
Organism
1283
Homo sapiens
Biosample type
1283
tissue
761
primary cell
170
in vitro differentiated cells
86
cell line
5
stem cell
Organ
388
pancreas
264
kidney
190
heart
165
liver
60
blood vessel
60
vasculature
56
brain
54
eye
53
musculature of body
50
limb
45
artery
28
adipose tissue
28
connective tissue
19
lung
18
ureter
15
epithelium
8
bone element
8
nerve
8
skeleton
5
spleen
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1189
AMP
47
KPMP
29
T1D
18
LungMap
Genome assembly (visualization)
817
GRCh38
754
hg19
Lab
1012
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
Karen Mohlke, UNC
18
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
5
inconsistent ontology term
4
audit script error
assay_slims!
DNA binding
lab.title!
Karen Mohlke, UNC
month_released!
February, 2021
BIOSAMPLE
ASSAY
1283 results
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total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
WGBS
snATAC-seq
pCHi-C
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
RNA microarray
tissue
islet of Langerhans
292
68
1
6
7
4
3
1
1
4
kidney
49
75
13
59
6
1
1
1
liver
147
2
3
1
1
1
1
coronary artery
1
36
2
heart left ventricle
3
2
3
18
4
1
1
1
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