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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1006
total RNA-seq
239
ATAC-seq
180
single cell RNA-seq
176
DNase-seq
86
RNA microarray
27
WGBS
27
snATAC-seq
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1202
Transcription
DNA binding
446
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
2
control
2
nucleotide modification
Date released
545
February, 2021
228
August, 2021
163
June, 2019
143
May, 2020
120
July, 2018
108
August, 2017
95
February, 2023
77
July, 2019
47
September, 2023
40
May, 2021
40
November, 2019
40
October, 2019
38
March, 2020
26
May, 2022
24
February, 2020
18
April, 2020
16
November, 2018
15
May, 2023
8
January, 2021
8
October, 2017
6
April, 2018
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1178
bam
1130
bigWig
1071
tsv
366
bed narrowPeak
182
bigBed narrowPeak
176
bed broadPeak
175
bed bed3+
174
bigBed broadPeak
157
fastq
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
Organism
1820
Homo sapiens
Biosample type
1820
tissue
809
primary cell
196
in vitro differentiated cells
174
cell line
5
stem cell
Organ
472
connective tissue
414
adipose tissue
388
pancreas
272
kidney
190
heart
166
liver
158
bone element
60
blood vessel
60
vasculature
56
brain
56
limb
54
eye
53
musculature of body
45
artery
19
lung
18
ureter
16
skeleton
15
epithelium
nerve
5
spleen
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1726
AMP
47
KPMP
29
T1D
18
LungMap
Genome assembly (visualization)
1262
GRCh38
1199
hg19
Lab
1549
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
Karen Mohlke, UNC
18
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
89
inconsistent ontology term
9
audit script error
assay_slims!
DNA binding
lab.title!
Karen Mohlke, UNC
organ_slims!
nerve
BIOSAMPLE
ASSAY
1820 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
WGBS
snATAC-seq
pCHi-C
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
adipose tissue
382
3
3
1
islet of Langerhans
292
68
6
1
7
4
3
1
1
4
kidney
49
75
64
13
6
1
1
1
liver
147
1
2
3
1
1
1
1
bone element
84
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