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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1016
total RNA-seq
220
ATAC-seq
151
DNase-seq
87
RNA microarray
87
single cell RNA-seq
28
snATAC-seq
22
pCHi-C
19
WGBS
15
small RNA-seq
13
Hi-C
10
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1118
Transcription
DNA binding
403
DNA accessibility
29
DNA methylation
13
3D chromatin structure
Target of assay
2
control
2
nucleotide modification
Date released
545
February, 2021
143
May, 2020
137
August, 2021
136
June, 2019
120
July, 2018
108
August, 2017
66
May, 2022
59
February, 2023
57
July, 2019
47
September, 2023
44
October, 2019
40
November, 2019
38
May, 2021
31
March, 2020
22
February, 2020
19
April, 2020
16
November, 2018
15
May, 2023
8
January, 2021
7
October, 2017
6
April, 2018
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1135
bam
1106
bigWig
965
tsv
323
bed narrowPeak
157
bigBed narrowPeak
157
txt
156
fastq
150
bed bed3+
150
bed broadPeak
149
bigBed broadPeak
64
xls
18
bed bedMethyl
18
bigBed bedMethyl
8
hic
7
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
Organism
1677
Homo sapiens
Biosample type
1679
tissue
801
primary cell
195
in vitro differentiated cells
118
cell line
7
stem cell
Organ
473
connective tissue
415
adipose tissue
387
pancreas
272
kidney
206
liver
heart
158
bone element
60
blood vessel
60
vasculature
56
brain
56
limb
54
eye
53
musculature of body
45
artery
20
lung
18
ureter
16
skeleton
15
epithelium
8
nerve
5
spleen
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1584
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
1183
GRCh38
1179
hg19
Lab
1368
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Stephen Parker, UMich
Audit category:
89
inconsistent ontology term
9
audit script error
assay_slims!
DNA binding
lab.title!
Stephen Parker, UMich
organ_slims!
heart
BIOSAMPLE
ASSAY
1679 results
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total RNA-seq
ATAC-seq
DNase-seq
RNA microarray
single cell RNA-seq
snATAC-seq
pCHi-C
WGBS
small RNA-seq
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
adipose tissue
382
3
1
3
islet of Langerhans
292
67
1
6
7
4
3
1
1
4
kidney
49
75
13
64
6
1
1
1
liver
167
20
2
1
1
3
1
1
1
bone element
84
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