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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
150
total RNA-seq
4
DNase-seq
4
WGBS
3
small RNA-seq
1
ATAC-seq
1
Hi-C
1
RRBS
1
pCHi-C
1
single cell RNA-seq
Assay category
DNA binding
154
Transcription
5
DNA accessibility
5
DNA methylation
1
3D chromatin structure
Date released
143
May, 2020
8
July, 2019
6
August, 2017
3
March, 2020
3
November, 2018
1
February, 2020
1
February, 2021
1
October, 2019
Available data
156
bam
156
bigWig
154
tsv
6
fastq
4
bed narrowPeak
4
bigBed narrowPeak
3
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
csv
1
hic
Organism
166
Homo sapiens
Biosample type
166
tissue
10
cell line
10
primary cell
Organ
473
connective tissue
415
adipose tissue
325
pancreas
190
heart
166
liver
158
bone element
83
kidney
60
blood vessel
60
vasculature
56
brain
56
limb
54
eye
53
musculature of body
45
artery
18
ureter
16
skeleton
15
epithelium
8
nerve
5
spleen
2
intestine
1
adrenal gland
1
esophagus
gonad
1
large intestine
1
lung
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
166
AMP
Genome assembly (visualization)
158
hg19
156
GRCh38
Lab
166
AMP-T2D consortium
40
Karen Mohlke, UNC
assay_slims!
DNA binding
organ_slims!
gonad
BIOSAMPLE
ASSAY
166 results
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total RNA-seq
DNase-seq
WGBS
small RNA-seq
ATAC-seq
Hi-C
RRBS
pCHi-C
single cell RNA-seq
tissue
liver
147
2
3
1
1
1
1
1
right lobe of liver
3
2
1
2
1
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