Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
587
total RNA-seq
251
ATAC-seq
178
DNase-seq
174
single cell RNA-seq
28
snATAC-seq
27
WGBS
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
RNA microarray
Assay category
DNA binding
777
Transcription
461
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
2
control
2
nucleotide modification
Date released
February, 2021
229
August, 2021
163
June, 2019
143
May, 2020
120
July, 2018
108
August, 2017
95
February, 2023
77
July, 2019
66
May, 2022
47
September, 2023
46
October, 2019
40
May, 2021
40
November, 2019
38
March, 2020
25
February, 2020
19
April, 2020
16
November, 2018
15
May, 2023
8
January, 2021
8
October, 2017
6
April, 2018
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
733
bam
713
bigWig
624
tsv
381
bed narrowPeak
184
bigBed narrowPeak
178
bed broadPeak
177
bed bed3+
176
bigBed broadPeak
157
fastq
68
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
5
bed bed3
1
bedpe
Organism
1322
Homo sapiens
Biosample type
1324
tissue
761
primary cell
170
in vitro differentiated cells
90
cell line
7
stem cell
Organ
388
pancreas
264
kidney
205
liver
190
heart
60
blood vessel
60
vasculature
56
brain
54
eye
53
musculature of body
50
limb
45
artery
29
adipose tissue
29
connective tissue
20
lung
18
ureter
15
epithelium
8
bone element
8
nerve
8
skeleton
5
spleen
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1229
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
817
GRCh38
774
hg19
Lab
1012
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
5
inconsistent ontology term
4
audit script error
assay_slims!
DNA binding
month_released!
February, 2021
organ_slims!
skin of body
BIOSAMPLE
ASSAY
1324 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
RNA microarray
tissue
islet of Langerhans
292
67
1
6
7
4
3
1
1
4
kidney
49
75
13
59
6
1
1
1
liver
167
20
2
3
1
1
1
1
coronary artery
1
36
2
heart left ventricle
3
2
3
18
4
1
1
1
+ See 90 more…
See all biosamples
Download