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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1031
total RNA-seq
252
ATAC-seq
180
single cell RNA-seq
178
DNase-seq
87
RNA microarray
27
WGBS
25
pCHi-C
20
snATAC-seq
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1227
Transcription
454
DNA accessibility
DNA binding
38
DNA methylation
16
3D chromatin structure
Target of assay
2
control
2
nucleotide modification
Date released
545
February, 2021
229
August, 2021
163
June, 2019
143
May, 2020
120
July, 2018
108
August, 2017
95
February, 2023
77
July, 2019
66
May, 2022
47
October, 2019
47
September, 2023
40
May, 2021
40
November, 2019
38
March, 2020
25
February, 2020
19
April, 2020
16
November, 2018
15
May, 2023
January, 2021
October, 2017
6
April, 2018
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1178
bam
1149
bigWig
1076
tsv
383
bed narrowPeak
184
bigBed narrowPeak
177
bed bed3+
177
bed broadPeak
176
bigBed broadPeak
157
txt
149
fastq
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
Organism
1852
Homo sapiens
Biosample type
1854
tissue
801
primary cell
196
in vitro differentiated cells
178
cell line
7
stem cell
Organ
472
connective tissue
414
adipose tissue
375
pancreas
272
kidney
206
liver
190
heart
158
bone element
60
blood vessel
60
vasculature
56
limb
55
brain
54
eye
53
musculature of body
45
artery
20
lung
18
ureter
16
skeleton
15
epithelium
8
nerve
4
spleen
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1767
AMP
47
KPMP
21
T1D
19
LungMap
Genome assembly (visualization)
1261
GRCh38
1219
hg19
Lab
1551
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
44
Kyle Gaulton, UCSD
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
89
inconsistent ontology term
9
audit script error
assay_slims!
DNA binding
month_released!
January, 2021
October, 2017
target.investigated_as!
histone
BIOSAMPLE
ASSAY
1854 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
WGBS
pCHi-C
snATAC-seq
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
adipose tissue
382
3
3
1
islet of Langerhans
292
67
6
1
4
3
3
1
1
4
kidney
49
75
64
13
6
1
1
1
liver
167
20
1
2
3
1
1
1
1
bone element
84
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