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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1019
total RNA-seq
257
ATAC-seq
179
single cell RNA-seq
146
DNase-seq
87
RNA microarray
27
snATAC-seq
26
WGBS
15
small RNA-seq
7
RRBS
5
Hi-C
5
pCHi-C
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1213
Transcription
DNA binding
434
DNA accessibility
33
DNA methylation
5
3D chromatin structure
Target of assay
2
control
2
nucleotide modification
Date released
545
February, 2021
229
August, 2021
143
May, 2020
131
June, 2019
120
July, 2018
104
August, 2017
95
February, 2023
70
July, 2019
64
May, 2022
47
October, 2019
47
September, 2023
40
May, 2021
40
November, 2019
March, 2020
23
February, 2020
19
April, 2020
16
November, 2018
15
May, 2023
8
January, 2021
8
October, 2017
6
April, 2018
5
March, 2019
4
November, 2020
3
December, 2019
1
August, 2022
1
January, 2018
Available data
1143
bam
1112
bigWig
1044
tsv
357
bed narrowPeak
156
txt
155
fastq
152
bigBed narrowPeak
146
bed broadPeak
144
bed bed3+
144
bigBed broadPeak
64
xls
22
bed bedMethyl
22
bigBed bedMethyl
6
csv
5
bed bed3
4
hic
3
bedpe bed3+
1
bedpe
Organism
1782
Homo sapiens
Biosample type
1784
tissue
796
primary cell
188
in vitro differentiated cells
167
cell line
3
stem cell
Organ
472
connective tissue
414
adipose tissue
381
pancreas
272
kidney
203
liver
183
heart
158
bone element
57
blood vessel
57
vasculature
56
limb
54
brain
54
eye
musculature of body
45
artery
19
lung
18
ureter
16
skeleton
15
epithelium
8
nerve
4
spleen
1
pericardium
1
pituitary gland
1
skin of body
1
spinal cord
1
thymus
Project
1691
AMP
47
KPMP
27
T1D
19
LungMap
Genome assembly (visualization)
1227
GRCh38
1172
hg19
Lab
1472
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
86
inconsistent ontology term
8
audit script error
assay_slims!
DNA binding
month_released!
March, 2020
organ_slims!
blood
musculature of body
BIOSAMPLE
ASSAY
1784 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
small RNA-seq
RRBS
Hi-C
pCHi-C
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
adipose tissue
382
3
3
islet of Langerhans
290
66
6
1
7
1
3
4
1
4
kidney
49
75
64
13
6
1
1
1
liver
166
20
1
2
3
1
1
bone element
84
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