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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1022
total RNA-seq
258
ATAC-seq
178
DNase-seq
171
single cell RNA-seq
87
RNA microarray
27
WGBS
18
snATAC-seq
16
small RNA-seq
11
RRBS
9
Hi-C
5
pCHi-C
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1209
Transcription
DNA binding
458
DNA accessibility
38
DNA methylation
9
3D chromatin structure
Target of assay
2
control
2
nucleotide modification
Date released
545
February, 2021
229
August, 2021
163
June, 2019
143
May, 2020
120
July, 2018
108
August, 2017
95
February, 2023
77
July, 2019
66
May, 2022
47
October, 2019
47
September, 2023
40
May, 2021
40
November, 2019
March, 2020
25
February, 2020
16
November, 2018
15
May, 2023
8
January, 2021
8
October, 2017
6
April, 2018
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1178
bam
1148
bigWig
1048
tsv
389
bed narrowPeak
184
bigBed narrowPeak
178
bed broadPeak
177
bed bed3+
176
bigBed broadPeak
157
fastq
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
6
csv
5
bed bed3
4
hic
3
bedpe bed3+
1
bedpe
Organism
1812
Homo sapiens
Biosample type
1813
tissue
808
primary cell
188
in vitro differentiated cells
168
cell line
3
stem cell
Organ
472
connective tissue
414
adipose tissue
381
pancreas
272
kidney
203
liver
183
heart
158
bone element
57
blood vessel
57
vasculature
56
limb
54
brain
54
eye
48
musculature of body
45
artery
lung
18
ureter
16
skeleton
15
epithelium
8
nerve
4
spleen
1
pericardium
1
pituitary gland
1
skin of body
1
spinal cord
1
thymus
Project
1739
AMP
47
KPMP
27
T1D
Genome assembly (visualization)
1262
GRCh38
1210
hg19
Lab
1520
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
87
inconsistent ontology term
9
audit script error
assay_slims!
DNA binding
month_released!
March, 2020
organ_slims!
lung
BIOSAMPLE
ASSAY
1813 results
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total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
RNA microarray
WGBS
snATAC-seq
small RNA-seq
RRBS
Hi-C
pCHi-C
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
adipose tissue
382
3
3
islet of Langerhans
290
66
1
6
7
1
3
4
1
4
kidney
49
75
13
64
6
1
1
1
liver
166
20
2
1
3
1
1
bone element
84
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