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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
826
total RNA-seq
248
ATAC-seq
180
single cell RNA-seq
178
DNase-seq
28
snATAC-seq
27
WGBS
24
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
RNA microarray
3
snDrop-seq
Assay category
1022
Transcription
DNA binding
458
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
2
control
2
nucleotide modification
Date released
395
February, 2021
229
August, 2021
163
June, 2019
May, 2020
120
July, 2018
108
August, 2017
87
February, 2023
77
July, 2019
66
May, 2022
47
October, 2019
47
September, 2023
40
May, 2021
40
November, 2019
37
March, 2020
25
February, 2020
19
April, 2020
16
November, 2018
15
May, 2023
8
January, 2021
8
October, 2017
6
April, 2018
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
976
bam
956
bigWig
874
tsv
381
bed narrowPeak
184
bigBed narrowPeak
178
bed broadPeak
177
bed bed3+
176
bigBed broadPeak
157
fastq
69
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
1
bed bed3
1
bedpe
Organism
1566
Homo sapiens
Biosample type
1568
tissue
661
primary cell
196
in vitro differentiated cells
177
cell line
7
stem cell
Organ
473
connective tissue
415
adipose tissue
388
pancreas
272
kidney
190
heart
bone element
63
liver
60
blood vessel
60
vasculature
56
brain
56
limb
54
eye
53
musculature of body
45
artery
20
lung
18
ureter
16
skeleton
15
epithelium
8
nerve
5
spleen
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1473
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
1060
GRCh38
1013
hg19
Lab
1256
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
9
audit script error
5
inconsistent ontology term
assay_slims!
DNA binding
month_released!
May, 2020
organ_slims!
bone element
small intestine
BIOSAMPLE
ASSAY
1568 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
RNA microarray
snDrop-seq
tissue
adipose tissue
382
3
3
1
islet of Langerhans
292
68
6
1
7
4
3
1
1
4
kidney
49
75
64
13
6
1
1
1
liver
24
20
1
2
3
1
1
1
1
coronary artery
1
36
2
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