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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
190
total RNA-seq
100
ATAC-seq
1
FAIRE-seq
1
pCHi-C
1
single cell RNA-seq
Assay category
191
Transcription
DNA binding
101
DNA accessibility
Date released
707
February, 2021
291
May, 2020
276
August, 2021
234
May, 2021
205
February, 2023
200
May, 2022
168
July, 2018
107
August, 2017
85
July, 2019
65
October, 2019
61
March, 2020
59
September, 2020
49
April, 2018
48
November, 2019
47
September, 2023
41
September, 2018
25
February, 2020
19
April, 2020
16
January, 2021
15
February, 2018
15
May, 2023
15
November, 2020
10
December, 2019
8
January, 2018
8
October, 2017
7
August, 2020
5
January, 2019
5
March, 2019
5
March, 2023
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
2
November, 2018
2
October, 2018
1
August, 2022
1
December, 2018
Available data
250
bam
250
bigWig
189
tsv
18
fastq
10
bed narrowPeak
10
bigBed narrowPeak
9
bed bed3+
9
bed broadPeak
bigBed broadPeak
bed bedMethyl
7
bigBed bedMethyl
1
csv
Organism
293
Homo sapiens
Biosample type
148
primary cell
144
tissue
1
cell line
Organ
144
liver
1
pancreas
Project
248
AMP
45
T1D
Genome assembly (visualization)
234
hg19
188
GRCh38
Lab
248
AMP-T2D consortium
45
Kyle Gaulton, UCSD
Audit category:
8
inconsistent ontology term
assay_slims!
DNA binding
files.file_type!
bed bedMethyl
bigBed broadPeak
BIOSAMPLE
ASSAY
293 results
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Clear Filters
total RNA-seq
ATAC-seq
FAIRE-seq
pCHi-C
single cell RNA-seq
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
B cell
2
2
CD8-positive, alpha-beta T cell
2
2
+ See 25 more…
tissue
liver
143
pancreas
1
cell line
HepG2
1
See all biosamples
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