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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
387
total RNA-seq
6
ATAC-seq
4
WGBS
2
DNase-seq
2
pCHi-C
1
RNA microarray
Assay category
387
Transcription
DNA binding
8
DNA accessibility
4
DNA methylation
Date released
386
February, 2021
July, 2019
5
August, 2017
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
394
bigWig
393
bam
387
tsv
7
fastq
6
bed narrowPeak
4
bigBed narrowPeak
2
bed bed3+
bed bedMethyl
2
bed broadPeak
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
401
Homo sapiens
Biosample type
401
tissue
1
in vitro differentiated cells
Organ
717
pancreas
509
connective tissue
402
adipose tissue
382
epithelium
291
kidney
231
heart
226
liver
159
bone element
119
vasculature
117
blood vessel
102
artery
54
eye
48
limb
43
musculature of body
38
brain
20
lung
18
ureter
16
skeleton
15
embryo
9
blood
9
bodily fluid
7
nerve
5
vein
3
spleen
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
402
AMP
Genome assembly (visualization)
395
hg19
392
GRCh38
Lab
402
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_slims!
DNA binding
files.file_type!
bed bedMethyl
month_released!
February, 2020
July, 2019
BIOSAMPLE
ASSAY
402 results
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total RNA-seq
ATAC-seq
WGBS
DNase-seq
pCHi-C
RNA microarray
tissue
adipose tissue
382
3
1
1
subcutaneous adipose tissue
2
1
1
omental fat pad
1
2
subcutaneous abdominal adipose tissue
3
visceral abdominal adipose tissue
3
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in vitro differentiated cells
white fat cell
1
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