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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
76
ATAC-seq
65
total RNA-seq
6
snATAC-seq
4
Capture-C
3
STARR-seq
2
Hi-C
1
RNA microarray
Assay category
171
Transcription
82
DNA accessibility
DNA binding
2
3D chromatin structure
Date released
704
February, 2021
263
August, 2021
234
May, 2021
205
February, 2023
185
June, 2019
168
July, 2018
160
May, 2022
147
May, 2020
104
August, 2017
76
July, 2019
70
October, 2019
59
September, 2020
58
March, 2020
49
April, 2018
48
November, 2019
47
September, 2023
41
September, 2018
24
February, 2020
19
April, 2020
16
January, 2021
16
November, 2020
15
February, 2018
15
May, 2023
8
January, 2018
8
November, 2018
8
October, 2017
7
August, 2020
5
December, 2019
5
March, 2019
5
March, 2023
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
2
October, 2018
1
August, 2022
Available data
114
tsv
76
bed narrowPeak
64
xls
57
txt
25
bam
17
bigWig
2
bed bed3+
1
bedpe bed3+
1
hic
Organism
262
Homo sapiens
Biosample type
229
tissue
21
in vitro differentiated cells
13
cell line
Organ
130
kidney
92
heart
liver
8
embryo
6
blood vessel
6
vasculature
5
connective tissue
4
pancreas
2
artery
2
epithelium
1
adipose tissue
Project
263
AMP
Genome assembly (visualization)
89
GRCh38
30
hg19
Lab
128
Katalin Susztak, Upenn
126
AMP-T2D consortium
5
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
assay_slims!
DNA binding
files.file_type!
bed bedMethyl
organ_slims!
liver
target.investigated_as!
histone
BIOSAMPLE
ASSAY
263 results
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single cell RNA-seq
ATAC-seq
total RNA-seq
snATAC-seq
Capture-C
STARR-seq
Hi-C
RNA microarray
tissue
kidney
8
64
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 11 more…
in vitro differentiated cells
neural progenitor cell
10
7
adipocyte
1
1
osteoblast
1
1
cell line
H1-hESC
8
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
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