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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
6
Hi-C
6
total RNA-seq
2
RRBS
2
small RNA-seq
1
ATAC-seq
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
DNA binding
9
Transcription
6
3D chromatin structure
2
DNA accessibility
2
DNA methylation
Date released
8
July, 2019
5
March, 2020
2
August, 2017
2
February, 2020
2
May, 2022
1
January, 2018
Available data
41
bigWig
40
bam
34
bed bed3+
33
bed broadPeak
bed narrowPeak
33
bigBed broadPeak
33
bigBed narrowPeak
9
tsv
4
bed bedMethyl
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
20
Homo sapiens
Biosample type
18
tissue
2
primary cell
Organ
648
pancreas
511
connective tissue
410
adipose tissue
335
epithelium
208
liver
174
heart
154
kidney
151
bone element
74
blood vessel
74
vasculature
58
artery
33
brain
24
eye
20
lung
20
musculature of body
15
embryo
11
limb
blood
9
bodily fluid
8
skeleton
5
nerve
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
20
AMP
Genome assembly (visualization)
10
hg19
6
GRCh38
Lab
20
AMP-T2D consortium
Audit category:
1
audit script error
assay_slims!
DNA binding
files.file_type!
bed narrowPeak
bigBed bedMethyl
organ_slims!
blood
BIOSAMPLE
ASSAY
20 results
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Hi-C
total RNA-seq
RRBS
small RNA-seq
ATAC-seq
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
1
2
1
1
1
1
gastrocnemius medialis
4
1
psoas muscle
2
2
1
left ventricle myocardium
1
primary cell
skeletal muscle satellite cell
1
1
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