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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
189
total RNA-seq
5
WGBS
4
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
DNase-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
193
Transcription
DNA binding
7
DNA methylation
4
3D chromatin structure
1
DNA accessibility
1
DNA sequencing
Date released
144
May, 2020
20
May, 2022
13
August, 2021
10
July, 2019
5
August, 2017
5
December, 2019
5
January, 2019
3
March, 2020
2
February, 2021
1
December, 2018
1
February, 2020
1
November, 2018
1
October, 2019
Available data
190
bigWig
174
tsv
171
bam
bed narrowPeak
13
fastq
7
bed bed3+
6
bigBed narrowPeak
5
bed broadPeak
bigBed broadPeak
3
bed bedMethyl
3
bigBed bedMethyl
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
211
Homo sapiens
Biosample type
182
tissue
22
cell line
7
primary cell
Organ
654
pancreas
514
connective tissue
412
adipose tissue
341
epithelium
211
liver
182
heart
158
kidney
151
bone element
76
vasculature
75
blood vessel
58
artery
35
brain
25
eye
24
musculature of body
20
lung
15
embryo
12
limb
9
blood
9
bodily fluid
8
skeleton
5
nerve
3
spleen
2
intestine
2
pericardium
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
211
AMP
Genome assembly (visualization)
168
hg19
163
GRCh38
Lab
178
AMP-T2D consortium
20
Karen Mohlke, UNC
13
Bing Ren, UCSD
assay_slims!
DNA binding
files.file_type!
bed narrowPeak
bigBed broadPeak
files.file_type!!
bigBed broadPeak
BIOSAMPLE
ASSAY
211 results
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total RNA-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
RRBS
STARR-seq
DNase-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
167
3
1
1
1
1
1
right lobe of liver
3
1
2
1
cell line
HepG2
14
1
2
2
2
1
primary cell
hepatocyte
5
1
endothelial cell of hepatic sinusoid
1
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