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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
184
total RNA-seq
3
Hi-C
3
WGBS
3
pCHi-C
3
small RNA-seq
2
STARR-seq
1
DNase-seq
1
RRBS
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
188
Transcription
DNA binding
4
DNA methylation
3
3D chromatin structure
1
DNA accessibility
1
DNA sequencing
Date released
144
May, 2020
20
May, 2022
13
August, 2021
10
July, 2019
5
December, 2019
3
August, 2017
3
March, 2020
2
February, 2021
1
February, 2020
1
October, 2019
Available data
190
bigWig
174
tsv
171
bam
bed narrowPeak
fastq
7
bed bed3+
6
bigBed narrowPeak
5
bed broadPeak
5
bigBed broadPeak
3
bed bedMethyl
3
bigBed bedMethyl
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
202
Homo sapiens
Biosample type
180
tissue
15
cell line
7
primary cell
Organ
507
connective tissue
408
adipose tissue
379
pancreas
202
liver
182
heart
178
epithelium
158
kidney
151
bone element
76
vasculature
75
blood vessel
58
artery
34
brain
25
eye
musculature of body
20
lung
12
limb
10
embryo
9
blood
9
bodily fluid
8
skeleton
5
nerve
2
intestine
2
pericardium
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
202
AMP
Genome assembly (visualization)
162
hg19
157
GRCh38
Lab
169
AMP-T2D consortium
20
Karen Mohlke, UNC
13
Bing Ren, UCSD
assay_slims!
DNA binding
files.file_type!
bed narrowPeak
fastq
organ_slims!
musculature of body
BIOSAMPLE
ASSAY
202 results
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total RNA-seq
Hi-C
WGBS
pCHi-C
small RNA-seq
STARR-seq
DNase-seq
RRBS
single cell RNA-seq
whole genome sequencing assay
tissue
liver
167
1
2
1
1
1
right lobe of liver
3
1
2
1
cell line
HepG2
9
1
2
2
1
primary cell
hepatocyte
5
1
endothelial cell of hepatic sinusoid
1
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