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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
115
single cell RNA-seq
74
total RNA-seq
16
snATAC-seq
5
STARR-seq
3
Hi-C
2
Capture-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
189
Transcription
16
DNA accessibility
DNA binding
3
3D chromatin structure
1
DNA sequencing
Date released
657
February, 2021
291
May, 2020
199
May, 2021
198
August, 2021
135
July, 2018
105
August, 2017
100
February, 2023
88
July, 2019
82
May, 2022
56
March, 2020
51
October, 2019
47
September, 2023
40
September, 2020
25
February, 2020
20
November, 2019
19
April, 2020
16
April, 2018
16
January, 2021
15
February, 2018
15
May, 2023
8
January, 2018
8
November, 2018
8
November, 2020
5
January, 2019
5
March, 2019
5
March, 2023
4
December, 2019
2
June, 2018
2
October, 2017
1
August, 2018
1
August, 2022
1
December, 2018
1
October, 2022
1
September, 2018
Available data
123
tsv
bed narrowPeak
64
xls
57
txt
25
bam
17
bigWig
2
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
215
Homo sapiens
Biosample type
184
tissue
24
cell line
9
in vitro differentiated cells
Organ
92
heart
66
kidney
19
lung
13
liver
8
embryo
6
blood vessel
6
vasculature
4
pancreas
3
connective tissue
2
artery
epithelium
1
adipose tissue
Project
198
AMP
19
LungMap
Genome assembly (visualization)
19
hg19
15
GRCh38
Lab
114
AMP-T2D consortium
64
Katalin Susztak, Upenn
19
Xin Sun, UCSD
18
Bing Ren, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
1
inconsistent ontology term
assay_slims!
DNA binding
files.file_type!
bed narrowPeak
organ_slims!
epithelium
BIOSAMPLE
ASSAY
217 results
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single cell RNA-seq
total RNA-seq
snATAC-seq
STARR-seq
Hi-C
Capture-C
RNA microarray
whole genome sequencing assay
tissue
kidney
8
49
6
1
lung
9
10
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
+ See 12 more…
cell line
HepG2
9
2
1
1
H1-hESC
8
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
7
adipocyte
1
osteoblast
1
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