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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
65
total RNA-seq
6
snATAC-seq
4
Capture-C
3
STARR-seq
2
Hi-C
1
RNA microarray
Assay category
171
Transcription
DNA binding
6
DNA accessibility
2
3D chromatin structure
Date released
687
February, 2021
221
May, 2021
187
August, 2021
168
July, 2018
147
May, 2020
142
May, 2022
140
February, 2023
100
August, 2017
91
July, 2019
59
September, 2020
58
March, 2020
56
October, 2019
49
April, 2018
47
September, 2023
27
September, 2018
24
February, 2020
22
November, 2019
19
April, 2020
16
January, 2021
15
February, 2018
15
May, 2023
9
November, 2020
8
January, 2018
7
August, 2020
7
November, 2018
5
December, 2019
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
2
October, 2017
2
October, 2018
1
August, 2022
Available data
114
tsv
bed narrowPeak
64
xls
57
txt
25
bam
17
bigWig
2
bed bed3+
1
bedpe bed3+
1
hic
Organism
186
Homo sapiens
Biosample type
165
tissue
13
cell line
9
in vitro differentiated cells
Organ
92
heart
66
kidney
liver
8
embryo
6
blood vessel
6
vasculature
4
pancreas
3
connective tissue
2
artery
2
epithelium
1
adipose tissue
Project
187
AMP
Genome assembly (visualization)
18
hg19
15
GRCh38
Lab
116
AMP-T2D consortium
64
Katalin Susztak, Upenn
5
Bing Ren, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
assay_slims!
DNA binding
files.file_type!
bed narrowPeak
organ_slims!
liver
target.investigated_as!
nucleotide modification
BIOSAMPLE
ASSAY
187 results
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single cell RNA-seq
total RNA-seq
snATAC-seq
Capture-C
STARR-seq
Hi-C
RNA microarray
tissue
kidney
8
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 11 more…
cell line
H1-hESC
8
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
7
adipocyte
1
osteoblast
1
See all biosamples
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