Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
38
ATAC-seq
11
DNase-seq
9
total RNA-seq
6
single cell RNA-seq
5
Hi-C
1
FAIRE-seq
1
WGBS
1
pCHi-C
Assay category
DNA binding
50
DNA accessibility
15
Transcription
5
3D chromatin structure
1
DNA methylation
Date released
February, 2021
35
February, 2023
10
July, 2019
7
June, 2019
7
October, 2019
6
August, 2021
4
March, 2020
3
February, 2020
Available data
50
bed narrowPeak
24
bigWig
23
bam
16
tsv
13
bed bed3+
12
bigBed narrowPeak
11
bed broadPeak
11
bigBed broadPeak
3
hic
2
bed bedMethyl
2
bedpe bed3+
bigBed bedMethyl
2
hdf5
1
tar
Organism
72
Homo sapiens
Biosample type
59
tissue
13
primary cell
Organ
690
pancreas
357
epithelium
290
kidney
233
liver
191
heart
73
connective tissue
72
vasculature
70
blood vessel
66
brain
55
eye
53
musculature of body
49
limb
47
artery
30
adipose tissue
20
lung
18
ureter
15
embryo
9
blood
9
bodily fluid
9
bone element
8
nerve
8
skeleton
5
vein
3
spleen
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
72
AMP
Genome assembly (visualization)
55
GRCh38
25
hg19
Lab
72
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
assay_slims!
DNA binding
files.file_type!
bigBed bedMethyl
month_released!
February, 2021
BIOSAMPLE
ASSAY
72 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
DNase-seq
total RNA-seq
single cell RNA-seq
Hi-C
FAIRE-seq
WGBS
pCHi-C
tissue
coronary artery
36
2
1
aorta
1
4
1
1
1
tibial artery
1
2
1
ascending aorta
1
2
thoracic aorta
1
2
+ See 1 more…
primary cell
endothelial cell of umbilical vein
2
2
1
brain microvascular endothelial cell
1
1
choroid plexus epithelial cell
1
endothelial cell of coronary artery
1
endothelial cell of hepatic sinusoid
1
+ See 3 more…
See all biosamples
Download