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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
459
total RNA-seq
136
ATAC-seq
84
RNA microarray
80
single cell RNA-seq
51
WGBS
11
snATAC-seq
10
MeRIP-seq
9
Hi-C
2
Capture-C
2
RRBS
2
pCHi-C
2
small RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
Assay category
541
Transcription
DNA binding
147
DNA accessibility
53
DNA methylation
9
3D chromatin structure
Target of assay
5
control
5
nucleotide modification
Date released
176
February, 2021
157
July, 2018
104
May, 2022
89
August, 2017
64
February, 2023
58
May, 2021
42
November, 2019
39
April, 2018
26
September, 2018
19
September, 2020
11
March, 2020
10
November, 2020
8
January, 2021
7
August, 2020
6
July, 2019
5
March, 2019
5
October, 2017
4
August, 2021
4
November, 2018
4
October, 2019
3
August, 2018
3
October, 2022
2
October, 2018
1
August, 2022
1
February, 2020
1
June, 2018
Available data
551
bam
520
bigWig
475
tsv
324
fastq
94
txt
80
zippedFastqFolder
76
bed narrowPeak
bigBed narrowPeak
9
bed broadPeak
8
bed bed3+
7
bedpe bed3+
7
bigBed broadPeak
7
hic
6
bed bedMethyl
6
bigBed bedMethyl
4
bed bed3
3
cool
1
bedpe
1
hdf5
Organism
848
Homo sapiens
Biosample type
531
tissue
255
primary cell
63
cell line
Organ
696
pancreas
518
connective tissue
414
adipose tissue
355
epithelium
233
liver
229
heart
222
kidney
159
bone element
122
vasculature
121
blood vessel
103
artery
52
eye
35
brain
24
musculature of body
limb
20
lung
16
skeleton
15
embryo
9
blood
9
bodily fluid
6
nerve
4
spleen
2
intestine
2
pericardium
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
666
AMP
152
HPAP
31
T1D
Genome assembly (visualization)
529
hg19
508
GRCh38
Lab
627
AMP-T2D consortium
152
Klaus Kaestner, Upenn
52
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
150
inconsistent ontology term
4
audit script error
Audit category:
1
inconsistent assembly
assay_slims!
DNA binding
files.file_type!
bigBed narrowPeak
organ_slims!
limb
BIOSAMPLE
ASSAY
849 results
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total RNA-seq
ATAC-seq
RNA microarray
single cell RNA-seq
WGBS
snATAC-seq
MeRIP-seq
Hi-C
Capture-C
RRBS
pCHi-C
small RNA-seq
CRISPR genome editing followed by sgRNA sequencing
tissue
islet of Langerhans
278
58
6
7
4
3
1
bone element
84
bone tissue
58
body of pancreas
3
4
2
2
pancreas
2
2
4
1
1
1
+ See 6 more…
primary cell
pancreatic alpha cell
52
29
12
31
1
pancreatic beta cell
21
16
12
16
1
pancreatic acinar cell
4
4
12
1
pancreatic ductal cell
4
10
pancreatic delta cell
11
+ See 5 more…
cell line
EndoC_BH1
33
19
6
1
2
1
Panc1
1
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