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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
single cell RNA-seq
2
Hi-C
2
RRBS
2
pCHi-C
Assay category
DNA binding
24
Transcription
4
DNA accessibility
2
3D chromatin structure
2
DNA methylation
Target of assay
3
control
Date released
16
July, 2019
12
February, 2020
2
March, 2020
2
October, 2019
1
February, 2023
1
October, 2017
Available data
48
bigWig
46
bam
33
bed bed3+
32
bed narrowPeak
bigBed narrowPeak
31
bed broadPeak
31
bigBed broadPeak
26
tsv
3
fastq
2
bed bedMethyl
2
bigBed bedMethyl
2
hdf5
1
bed bed3
Organism
34
Homo sapiens
Biosample type
28
tissue
6
primary cell
Organ
696
pancreas
518
connective tissue
414
adipose tissue
355
epithelium
233
liver
229
heart
222
kidney
159
bone element
122
vasculature
blood vessel
103
artery
52
eye
35
brain
musculature of body
20
limb
20
lung
16
skeleton
15
embryo
9
blood
9
bodily fluid
6
nerve
4
spleen
2
intestine
2
pericardium
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
34
AMP
Genome assembly (visualization)
17
hg19
14
GRCh38
Lab
34
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_slims!
DNA binding
files.file_type!
bigBed narrowPeak
organ_slims!
blood vessel
musculature of body
BIOSAMPLE
ASSAY
34 results
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total RNA-seq
ATAC-seq
small RNA-seq
single cell RNA-seq
Hi-C
RRBS
pCHi-C
tissue
brain
1
1
1
cerebellum (Hemisphere)
1
1
1
frontal cortex
2
1
Ammon's horn
1
1
cerebellum
2
+ See 13 more…
primary cell
cerebellar granule cell
2
Purkinje cell
1
astrocyte of the cerebellum
1
brain pericyte
1
choroid plexus epithelial cell
1
See all biosamples
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