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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
17
total RNA-seq
4
ATAC-seq
4
pCHi-C
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
Assay category
DNA binding
24
Transcription
4
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
3
control
Date released
17
July, 2019
12
February, 2020
3
March, 2020
2
October, 2019
1
February, 2023
1
May, 2021
1
October, 2017
Available data
50
bigWig
47
bam
35
bed bed3+
33
bed narrowPeak
bigBed narrowPeak
32
bed broadPeak
32
bigBed broadPeak
27
tsv
3
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
Organism
37
Homo sapiens
Biosample type
30
tissue
7
primary cell
Organ
696
pancreas
518
connective tissue
414
adipose tissue
355
epithelium
233
liver
229
heart
222
kidney
159
bone element
122
vasculature
121
blood vessel
103
artery
52
eye
35
brain
musculature of body
20
limb
20
lung
16
skeleton
15
embryo
9
blood
9
bodily fluid
6
nerve
4
spleen
2
intestine
2
pericardium
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
36
AMP
1
T1D
Genome assembly (visualization)
18
hg19
14
GRCh38
Lab
36
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
1
inconsistent ontology term
assay_slims!
DNA binding
files.file_type!
bigBed narrowPeak
organ_slims!
musculature of body
BIOSAMPLE
ASSAY
37 results
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total RNA-seq
ATAC-seq
pCHi-C
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
tissue
brain
1
1
1
cerebellum (Hemisphere)
1
1
1
frontal cortex
2
1
Ammon's horn
1
1
cerebellum
2
+ See 14 more…
primary cell
cerebellar granule cell
2
Purkinje cell
1
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
+ See 1 more…
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