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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
59
total RNA-seq
10
ATAC-seq
6
snATAC-seq
5
STARR-seq
4
Capture-C
3
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
165
Transcription
16
DNA accessibility
DNA binding
3
3D chromatin structure
1
DNA sequencing
Date released
202
February, 2023
195
August, 2021
180
May, 2022
161
February, 2021
58
May, 2020
56
September, 2020
54
May, 2021
47
September, 2023
44
March, 2020
41
October, 2019
28
November, 2019
25
February, 2020
23
July, 2019
19
April, 2020
16
January, 2021
15
May, 2023
14
August, 2017
11
November, 2020
5
December, 2019
5
March, 2019
5
March, 2023
4
July, 2018
4
October, 2022
1
August, 2018
1
August, 2022
1
December, 2018
1
November, 2018
1
September, 2018
Available data
123
tsv
76
bed narrowPeak
xls
57
txt
25
bam
bigWig
2
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
194
Homo sapiens
Biosample type
165
tissue
18
cell line
12
in vitro differentiated cells
Organ
92
heart
66
kidney
13
liver
6
blood vessel
6
vasculature
4
pancreas
3
connective tissue
2
artery
2
epithelium
1
adipose tissue
Project
195
AMP
Genome assembly (visualization)
14
hg19
10
GRCh38
Lab
111
AMP-T2D consortium
64
Katalin Susztak, Upenn
18
Bing Ren, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
assay_slims!
DNA binding
files.file_type!
bigWig
xls
month_released!
August, 2020
BIOSAMPLE
ASSAY
195 results
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single cell RNA-seq
total RNA-seq
ATAC-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
8
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 11 more…
cell line
HepG2
9
2
1
1
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
10
adipocyte
1
osteoblast
1
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