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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
55
ATAC-seq
7
total RNA-seq
6
single cell RNA-seq
3
Hi-C
2
pCHi-C
Assay category
55
DNA accessibility
DNA binding
13
Transcription
3
3D chromatin structure
Date released
100
February, 2021
43
February, 2023
6
August, 2021
3
February, 2020
3
March, 2020
July, 2019
1
May, 2021
1
October, 2019
Available data
138
bam
bigWig
121
tsv
88
txt
62
bed narrowPeak
10
bigBed narrowPeak
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
4
bed bed3
3
hic
2
bedpe bed3+
1
tar
Organism
157
Homo sapiens
Biosample type
146
tissue
8
cell line
3
primary cell
Organ
264
pancreas
206
kidney
189
epithelium
145
heart
101
bone element
56
blood vessel
56
vasculature
51
eye
47
artery
47
liver
35
connective tissue
20
lung
16
brain
16
skeleton
12
adipose tissue
11
musculature of body
9
limb
8
blood
8
bodily fluid
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
156
AMP
1
T1D
Genome assembly (visualization)
51
GRCh38
23
hg19
Lab
156
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
1
audit script error
assay_slims!
DNA binding
files.file_type!
bigWig
month_released!
July, 2019
BIOSAMPLE
ASSAY
157 results
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RNA microarray
ATAC-seq
total RNA-seq
single cell RNA-seq
Hi-C
pCHi-C
tissue
bone element
84
coronary artery
35
1
aorta
4
1
1
acetabular part of hip bone
1
1
ilium
1
1
+ See 13 more…
cell line
smooth muscle cell of the coronary artery
8
primary cell
endothelial cell of umbilical vein
2
megakaryocyte
1
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