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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
48
DNase-seq
17
total RNA-seq
4
small RNA-seq
3
ATAC-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
DNA binding
52
DNA accessibility
24
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
3
control
Date released
48
June, 2019
18
July, 2019
12
February, 2020
2
March, 2020
2
October, 2019
1
February, 2023
Available data
68
bigWig
65
bam
53
bed bed3+
51
bed narrowPeak
51
bigBed narrowPeak
50
bed broadPeak
50
bigBed broadPeak
26
tsv
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
Organism
83
Homo sapiens
Biosample type
71
tissue
12
primary cell
Organ
520
connective tissue
411
adipose tissue
401
pancreas
302
kidney
259
heart
226
liver
207
epithelium
159
bone element
134
vasculature
131
blood vessel
107
artery
65
brain
56
eye
56
limb
55
musculature of body
20
lung
18
ureter
16
skeleton
10
embryo
9
blood
9
bodily fluid
8
nerve
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
83
AMP
Genome assembly (visualization)
61
GRCh38
57
hg19
Lab
83
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_slims!
DNA binding
files.file_type!
fastq
month_released!
October, 2022
BIOSAMPLE
ASSAY
83 results
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DNase-seq
total RNA-seq
small RNA-seq
ATAC-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
FAIRE-seq
tissue
brain
12
1
1
1
renal pelvis
10
frontal cortex
2
2
1
1
left renal pelvis
4
right renal pelvis
4
+ See 23 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
brain pericyte
1
1
cerebellar granule cell
2
choroid plexus epithelial cell
1
1
+ See 2 more…
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