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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
184
total RNA-seq
22
ATAC-seq
3
DNase-seq
3
Hi-C
3
WGBS
3
pCHi-C
3
small RNA-seq
2
STARR-seq
1
RRBS
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
188
Transcription
DNA binding
25
DNA accessibility
4
DNA methylation
3
3D chromatin structure
1
DNA sequencing
Date released
144
May, 2020
40
May, 2022
13
August, 2021
10
July, 2019
5
December, 2019
3
August, 2017
3
February, 2021
3
March, 2020
2
June, 2019
2
October, 2019
1
February, 2020
Available data
190
bigWig
174
tsv
171
bam
28
bed narrowPeak
fastq
7
bed bed3+
6
bigBed narrowPeak
5
bed broadPeak
5
bigBed broadPeak
3
bed bedMethyl
3
bigBed bedMethyl
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
226
Homo sapiens
Biosample type
200
tissue
16
cell line
10
primary cell
Organ
520
connective tissue
411
adipose tissue
404
pancreas
302
kidney
259
heart
226
liver
210
epithelium
159
bone element
134
vasculature
131
blood vessel
107
artery
65
brain
56
eye
limb
55
musculature of body
20
lung
18
ureter
16
skeleton
10
embryo
9
blood
9
bodily fluid
8
nerve
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
226
AMP
Genome assembly (visualization)
186
hg19
161
GRCh38
Lab
173
AMP-T2D consortium
40
Karen Mohlke, UNC
13
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
1
inconsistent replicate
assay_slims!
DNA binding
files.file_type!
fastq
organ_slims!
limb
BIOSAMPLE
ASSAY
226 results
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total RNA-seq
ATAC-seq
DNase-seq
Hi-C
WGBS
pCHi-C
small RNA-seq
STARR-seq
RRBS
single cell RNA-seq
whole genome sequencing assay
tissue
liver
167
20
1
2
1
1
1
right lobe of liver
3
1
1
2
cell line
HepG2
9
1
1
2
2
1
primary cell
hepatocyte
5
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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